DNA Sequence Alignment Accelerator

DNA Sequence Alignment Accelerator

Details

Category: Uncategorized

Created: August 17, 2009

Updated: January 27, 2020

Language: Verilog

Other project properties

Development Status: Alpha

WishBone compliant: No

WishBone version: n/a

License: LGPL

Description

This is an easily configurable systolic array of processors to compute the optimal alignment between two DNA sequences. It supports affine gap penalties, and is configurable between local (smith-waterman) and global (needleman-wunsch) alignment algorithms by setting an internal register. All code is in Verilog.