DNA Sequence Alignment Accelerator

Details
Category: Uncategorized
Created: August 17, 2009
Updated: January 27, 2020
Language: Verilog
Other project properties
Development Status: Alpha
WishBone compliant: No
WishBone version: n/a
License: LGPL
Description
This is an easily configurable systolic array of processors to compute the optimal alignment between two DNA sequences. It supports affine gap penalties, and is configurable between local (smith-waterman) and global (needleman-wunsch) alignment algorithms by setting an internal register. All code is in Verilog.